Deep learning has revolutionized the field of medical image analysis and new AI-driven technology is being clinically implemented every day to improve patient care. In order for the full potential of deep learning-based technology to be introduced to the clinic, which we are confident that it will, it requires brilliant, creative, and determined individuals to create new solutions to challenges in medical imaging.
McMedHacks is a student-led initiative to help curious scientists dive into medical image analysis with deep learning. The McMedHacks hackathon is an opportunity for bright minds to explore real-world medical image analysis challenges, collaborate with hackers from around the world, and compete for awesome prizes.
Requirements
Mandatory Submissions
1. Abstract: objective, introduction, methods, results, conclusions.
2. Visual aids: Presentation slides and or video demonstrations prepared for judging period. You must clearly indicate the opt-in challenge categor(ies) on your slides and during your presentation to the judges.
3. Questions prompted to answer when submitting:
- What did you learn during the 48 hrs of hacking, what challenges did you run into, accomplishments are you proud of?
- Built with (programming languages, framework, libraries used, etc. be specific)?
- Submissions of demos, zipped folder of code (ex. models.)
- Meet the requirements for each applicable prize category (details in Prizes and Categories).
- Submissions and their content must be in English
- Meet the Devpost deadline.
4. (optional, but highly recommended) A recording of your presentation
- A link to a 3-5 minute video that clearly and concisely introduces the objectives of the project, its innovation, and its functionality. This may be especially useful for the "Most Upvoted Prize" when other teams are checking out your project on Devpost after the judging period.
- Upon request, this video may be used during the judging period if your team cannot be present. However, being present to answer questions will significantly increase your chance of winning prizes.
Prizes
Grand Challenge - Alpha DaRT seed detection from CT images - Hosted by AlphaTau Medical
Alpha particles are highly lethal to cancerous cells, creating complex double-strand DNA breaks. Only a few hits to the cell nucleus are required to kill the cancer cell. However, as a result of their short-range in tissue, Alpha particles had been unsuitable for the treatment of cancer.
Alpha DaRT overcomes this range limitation and enables Alpha radiation for the treatment of solid tumors. The treatment is delivered by intratumoral insertion of the Alpha DaRT seed that contains Radium-224 atoms embedded below its surface. In the process of decay, Radium-224 releases its short-lived Alpha-emitting atoms into the tumor. By diffusion and convection, these atoms disperse to a therapeutically significant range of several millimeters, delivering a high dose of radiation inside the tumor.
The detection of seeds in CT images is a critical step in treatment planning and is currently performed manually. However, this process is prone to inter-and intra-observer variability. Automation would increase accuracy and efficiency while reducing cost.
AlphaTau has created a synthetic CT dataset for McMedHacks. Their unique challenge includes the detection of seeds from CT images. More information is coming soon.
Best Segmentation / Detection Application
Detection and segmentation are staples of deep learning-based medical image analysis. During the McMedHacks series, we have shown many of you some of the most popular deep learning architectures such as U-Net, ResNet, MaskRCNN, and more applied to various problems across imaging modalities. Now it is your turn to use a deep learning-based detection and/or segmentation algorithm.
Best Classification Application
Interestingly we can use the same principles used to distinguish dogs from cats to classify tissues into healthy, benign, and malignant, diagnose Alzheimer's disease, and much more. This prize is awarded to the submission that has the best implementation of a deep learning-based classification of medical images.
Best Medical Image Visualization
In almost every medical image analysis pipeline, visualizing images, labels and other metadata is crucial for clinical integration. An intuitive visualization is a great tool for physicians to understand and interpret medical images. We challenge you to create a clever and or beautiful way of visualizing medical images and or associated information.
Best GAN implementation
GANs are a powerful tool to generate synthetic images. In medical image analysis, GANs can be used to create new training data to overcome the traditional medical image data limitations, to generate contours of organs, and much more. This prize goes to the best implementation of GANs for medical image analysis.
Best Innovative Solution
Automatically considered: Deep learning-based medical image analysis faces many significant challenges ranging from inter-institutional data variability to the issue of patient-data sharing restrictions. This prize is awarded to the most innovative solution to a medical image analysis-specific challenge.
Rising star award
Automatically considered: Many of our participants are beginners in the field of deep learning and medical image analysis. This award goes to participants that showed the most growth and improvement over the course of McMedHacks.
Most Upvoted Submission
Automatically considered: This award goes to the submission that was most upvoted by the McMedHacks community.
Best Unfinished Project
Automatically considered: We know that 48 hours is not enough time to create a fully functioning deep learning application. This award goes to the best unfinished project submission.
Devpost Achievements
Submitting to this hackathon could earn you:
Judges
Shirin Abbasinejad Enger
Associate Professor & Canada Research Chair in Medical Physics, McGill University, Jewish General Hospital, Lady Davis Institute
Marc-André Renaud
Co-founder, Gray Oncology Solutions
Yujing Zou
McMedHacks Co-director
Luca Weishaupt
McMedHacks Co-director
Roy Keyes
Data scientist, machine learning engineer, and team leader in Houston, Texas, USA
Chris Chinenye Emezue
Researcher at Technical University of Munich / Mila
Heather Whitney
Associate professor of physics at Wheaton College and a visiting scholar in the Department of Radiology, The University of Chicago
Bonaventure Dossou
Researcher Jacobs University Bremen, Mila Quebec AI Institute & Roche Canada
Nathan Gaw
Postdoctoral Fellow, Georgia Institute of Technology
Farhad Maleki
Postdoctoral researcher at the McGill University Health Centre on predictive modeling in the absence of large-scale labeled imaging datasets
Freddy Nguyen
Physician Scientist Innovator, Research Fellow - MIT, Resident - Mt Sinai
Ilay Kamai
Physicist at Alpha Tau Medical
Yadin Cohen
Alpha Tau Medical
Liron Sofer
Software Developer at Alpha Tau Medical
Chen-Yang Su
M.Sc. Candidate in Computer Science, McGill University / Mila
Swapna Premasiri
PhD candidate at the Computational Brain Anatomy (CoBrA) Laboratory at McGill University
Judging Criteria
-
Technical Execution (Innovation)
Did this team solve a challenging technical problem (ex. model performance evaluation), get a working demo completed within the allotted time? Did they paint a cohesive story? Is it remarkable that teams could hack this project in just a day or two? -
Communication
How effective/engaging/coherent is the presentation overall? Is there a good rapport in the team? Is the presentation of the algorithm and the methods used to present the problem solution clear and understandable? -
Clinical / Community Impact
Did the team have a clear purpose with their project? Can the demo meaningfully address a current clinical / community problem or sub-problem? -
Presentation Professionalism
Was the team well spoken with a professional demeanor and approach? Professional, clear, and convincing delivery of scientific ideas and product is part of how we could translate theoretical ideas into reality.
Questions? Email the hackathon manager
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